Marine Biodiversity and Ecosystem Functioning
EU Network of Excellence

 
Main Menu

· Home
· Contacts
· Data Systems
· Documents
· FAQ
· Links
· MarBEF Open Archive
· Network Description
· Outreach
· Photo Gallery
· Quality Assurance
· Register of Resources
· Research Projects
· Rules and Guidelines
· Training
· Wiki
· Worldconference

 

Register of Resources (RoR)

 People  |  Datasets  |  Literature  |  Institutes  |  Projects 

[ report an error in this record ]basket (0): add | show Print this page

The ocean sampling day consortium
Kopf, A.; Bicak, M.; Kottmann, R.; Schnetzer, J.; Kostadinov, I.; Lehmann, K.; Fernàndez-Guerra, A.; Jeanthon, C.; Rahav, E.; Ullrich, M.; Wichels, A.; Gerdts, G.; Polymenakou, P.; Kotoulas, G.; Siam, R.; Abdallah, R.Z.; Sonnenschein, E.; Cariou, T.; O'Gara, F.; Jackson, S.; Orlic, S.; Steinke, M.; Busch, J.; Duarte, B.; Caçador, I.; Canning-Clode, J.; Marteinsson, V.; Reynisson, E.; Loureiro, C.M.; Luna, G.M.; Quero, G.M.; Löscher, C.R.; Kremp, A.; DeLorenzo, M.E.; Øvreås, L.; Tolman, J.; LaRoche, J.; Penna, A.; Frischer, M.; Davis, T.; Barker, K.; Meyer, C.P.; Ramos, S.; Magalhães, C.; Jude-Lemeilleur, F.; Aguirre-Macedo, M.L.; Wang, S.; Poulton, N.; Jones, S.; Collin, R.; Fuhrman, J.A.; Conan, P.; Alonso, C.; Stambler, N.; Goodwin, K.; Yakimov, M.M.; Baltar, F.; Bodrossy, L.; Van de Kamp, J.; Frampton, D.M.F.; Ostrowski, M.; Van Ruth, P.; Malthouse, P.; Claus, S.; Deneudt, K.; Mortelmans, J.; Pitois, S.; Wallom, D.; Salter, I.; Costa, R.; Schroeder, D.C.; Kandil, M.M.; Amaral, V.; Biancalana, F.; Santana, R.; Pedrotti, M.L.; Yoshida, T.; Ogata, H.; Ingleton, T.; Munnik, K.; Rodriguez-Ezpeleta, N.; Berteaux-Lecellier, V.; Wecker, P.; Cancio, I.; Vaulot, D.; Bienhold, C.; Ghazal, H.; Chaouni, B.; Essayer, S.; Ettamimi, S.; Zaid, E.H.; Boukhatem, N.; Bouali, A.; Chahboune, R.; Barrijal, S.; Timinouni, M.; El Otmani, F.; Bennani, M.; Mea, M.; Todorova, N.; Karamfilov, V.; ten Hoopen, P.; Cochrane, G.; L'Haridon, S.; Bizsel, K.C.; Vezzi, A.; Lauro, F.M.; Martin, P.; Jensen, R.M.; Hinks, J.; Gebbels, S.; Rosselli, R.; De Pascale, F.; Schiavon, R.; dos Santos, A.; Villar, E.; Pesant, S.; Cataletto, B.; Malfatti, F.; Edirisinghe, R.; Herrera Silveira, J.A.; Barbier, M.; Turk, V.; Tinta, T.; Fuller, W.J.; Salihoglu, I.; Serakinci, N.; Ergoren, M.C.; Bresnan, E.; Iriberri, J.; Nyhus, P.A.F.; Bente, E.; Karlsen, H.E.; Golyshin, P.N.; Gasol, J.M.; Moncheva, S.; Dzhembekova, N.; Johnson, Z.; Sinigalliano, C.D.; Gidley, M.L.; Zingone, A.; Danovaro, R.; Tsiamis, G.; Clark, M.S.; Costa, A.C.; El Bour, M.; Martins, A.M.; Collins, R.E.; Ducluzeau, A.-L.; Martinez, J.; Costello, M.J.; Amaral-Zettler, L.A.; Gilbert, J.A.; Davies, N.; Field, D.; Glóckner, F.O. (2015). The ocean sampling day consortium. GigaScience 4: 27. http://dx.doi.org/10.1186/s13742-015-0066-5
In: GigaScience. Oxford Academic: Oxford. e-ISSN 2047-217X
Peer reviewed article  

Available in  Authors 

Keywords
    Bacteria
    Biodiversity
    Marine
    Standards
Author keywords
    Ocean sampling day; OSD; Genomics; Health Index; Microorganism; Metagenomics; Micro B3

Authors  Top 
  • Kopf, A.
  • Bicak, M.
  • Kottmann, R.
  • Schnetzer, J.
  • Kostadinov, I.
  • Lehmann, K.
  • Fernàndez-Guerra, A.
  • Jeanthon, C.
  • Rahav, E.
  • Ullrich, M.
  • Wichels, A.
  • Gerdts, G.
  • Polymenakou, P.
  • Kotoulas, G.
  • Siam, R.
  • Abdallah, R.Z.
  • Sonnenschein, E.
  • Cariou, T.
  • O'Gara, F.
  • Jackson, S.
  • Orlic, S.
  • Steinke, M.
  • Busch, J.
  • Duarte, B.
  • Caçador, I.
  • Canning-Clode, J.
  • Marteinsson, V.
  • Reynisson, E.
  • Loureiro, C.M.
  • Luna, G.M.
  • Quero, G.M.
  • Löscher, C.R.
  • Kremp, A.
  • DeLorenzo, M.E.
  • Øvreås, L.
  • Tolman, J.
  • LaRoche, J.
  • Penna, A.
  • Frischer, M.
  • Davis, T.
  • Barker, K.
  • Meyer, C.P.
  • Ramos, S.
  • Magalhães, C.
  • Jude-Lemeilleur, F.
  • Aguirre-Macedo, M.L.
  • Wang, S.
  • Poulton, N.
  • Jones, S.
  • Collin, R.
  • Fuhrman, J.A.
  • Conan, P.
  • Alonso, C.
  • Stambler, N.
  • Goodwin, K.
  • Yakimov, M.M.
  • Baltar, F.
  • Bodrossy, L.
  • Van de Kamp, J.
  • Frampton, D.M.F.
  • Ostrowski, M.
  • Van Ruth, P.
  • Malthouse, P.
  • Claus, S., more
  • Deneudt, K., more
  • Mortelmans, J.
  • Pitois, S.
  • Wallom, D.
  • Salter, I.
  • Costa, R.
  • Schroeder, D.C.
  • Kandil, M.M.
  • Amaral, V.
  • Biancalana, F.
  • Santana, R.
  • Pedrotti, M.L.
  • Yoshida, T.
  • Ogata, H.
  • Ingleton, T.
  • Munnik, K.
  • Rodriguez-Ezpeleta, N.
  • Berteaux-Lecellier, V.
  • Wecker, P.
  • Cancio, I.
  • Vaulot, D.
  • Bienhold, C.
  • Ghazal, H.
  • Chaouni, B.
  • Essayer, S.
  • Ettamimi, S.
  • Zaid, E.H.
  • Boukhatem, N.
  • Bouali, A.
  • Chahboune, R.
  • Barrijal, S.
  • Timinouni, M.
  • El Otmani, F.
  • Bennani, M.
  • Mea, M.
  • Todorova, N.
  • Karamfilov, V.
  • ten Hoopen, P.
  • Cochrane, G.
  • L'Haridon, S.
  • Bizsel, K.C.
  • Vezzi, A.
  • Lauro, F.M.
  • Martin, P.
  • Jensen, R.M.
  • Hinks, J.
  • Gebbels, S.
  • Rosselli, R.
  • De Pascale, F.
  • Schiavon, R.
  • dos Santos, A.
  • Villar, E.
  • Pesant, S.
  • Cataletto, B.
  • Malfatti, F.
  • Edirisinghe, R.
  • Herrera Silveira, J.A.
  • Barbier, M.
  • Turk, V.
  • Tinta, T.
  • Fuller, W.J.
  • Salihoglu, I.
  • Serakinci, N.
  • Ergoren, M.C.
  • Bresnan, E.
  • Iriberri, J.
  • Nyhus, P.A.F.
  • Bente, E.
  • Karlsen, H.E.
  • Golyshin, P.N.
  • Gasol, J.M., more
  • Moncheva, S., more
  • Dzhembekova, N.
  • Johnson, Z.
  • Sinigalliano, C.D.
  • Gidley, M.L.
  • Zingone, A., more
  • Danovaro, R., more
  • Tsiamis, G.
  • Clark, M.S.
  • Costa, A.C.
  • El Bour, M.
  • Martins, A.M.
  • Collins, R.E.
  • Ducluzeau, A.-L.
  • Martinez, J.
  • Costello, M.J., more
  • Amaral-Zettler, L.A.
  • Gilbert, J.A.
  • Davies, N.
  • Field, D.
  • Glóckner, F.O.

Abstract
    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy Top | Authors 


If any information here appears to be incorrect, please contact us
Back to Register of Resources
 
Quick links

MarBEF WIKI

Erasmus Mundus Master of Science in Marine Biodiversity and Conservation (EMBC)
Outreach

Science
Responsive Mode Programme (RMP) - Marie Nordstrom, copyright Aspden Rebecca

WoRMS
part of WoRMS logo

ERMS 2.0
Epinephelus marginatus Picture: JG Harmelin

EurOBIS

Geographic System

Datasets

 


Web site hosted and maintained by Flanders Marine Institute (VLIZ) - Contact data-at-marbef.org